Difference between revisions of "Lipoquality:Database"

From lipidbank_wiki
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<h1>Lipoquality</h1>
 
<h1>Lipoquality</h1>
<p>
 
  
</p>
+
<h2>Dataset</h2>
 
+
Please click '''[[Lipoquality:Resource|here]]''' to access LipoQuality data.
<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em">[[Lipoquality:Resource|Resource]]</h2>
 
 
 
 
 
Please click [[Lipoquality:Resource|here]] to access LipoQuality data.
 
  
<h2>Dataset</h2>
 
 
;Mouse : C75BL/6J mouse fed with fish-less chow for 2 weeks  
 
;Mouse : C75BL/6J mouse fed with fish-less chow for 2 weeks  
 
; Organs : Aorta (ApoE KO), Brain, Heart, Kidney, Liver, Lung, Macrophage, Muscle, Plasma, Plasma (ApoE KO), Small intestine, Spleen
 
; Organs : Aorta (ApoE KO), Brain, Heart, Kidney, Liver, Lung, Macrophage, Muscle, Plasma, Plasma (ApoE KO), Small intestine, Spleen
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<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em">{{Bilingual|脂質記載法|Notation}}</h2>
+
<h2>{{Bilingual|脂質記載法|Notation}}</h2>
<p>
+
 
 
The style follows the proposal for lipidomics nomenclature
 
The style follows the proposal for lipidomics nomenclature
 
(Pauling JK et al. PLOS ONE 2017, PMID 29161304). Please visit [http://prime.psc.riken.jp/Metabolomics_Software/MS-DIAL/index5.html the MS-DIAL page] for more details.
 
(Pauling JK et al. PLOS ONE 2017, PMID 29161304). Please visit [http://prime.psc.riken.jp/Metabolomics_Software/MS-DIAL/index5.html the MS-DIAL page] for more details.
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! ''non-hydroxy FA''<br/>[N]
 
! ''non-hydroxy FA''<br/>[N]
 
! ''&alpha;-hydroxy FA''<br/>[A]
 
! ''&alpha;-hydroxy FA''<br/>[A]
 +
! ''&beta;-hydroxy FA'' <br/>[B]
 
! ''esterified &omega;-hydroxy FA''<br/>[EO]
 
! ''esterified &omega;-hydroxy FA''<br/>[EO]
 
|-
 
|-
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| Cer-NDS
 
| Cer-NDS
 
| Cer-ADS
 
| Cer-ADS
 +
| Cer-BDS
 
| Cer-EODS
 
| Cer-EODS
 
|-
 
|-
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| Cer-NS
 
| Cer-NS
 
| Cer-AS
 
| Cer-AS
 +
| Cer-BS
 
| Cer-EOS
 
| Cer-EOS
 
|-
 
|-
 
! ''phytosphingosine''<br/>[P]
 
! ''phytosphingosine''<br/>[P]
 +
| Cer-NP
 
| Cer-AP
 
| Cer-AP
| Cer-NP
+
| Cer-BP
 
| Cer-EOP
 
| Cer-EOP
 
|-
 
|-
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| Cer-NH
 
| Cer-NH
 
| Cer-AH
 
| Cer-AH
 +
| Cer-BH
 
| Cer-EOH
 
| Cer-EOH
 
|}
 
|}
  
 
<references/>
 
<references/>

Revision as of 10:31, 1 May 2019

Lipoquality

Dataset

Please click here to access LipoQuality data.

Mouse
C75BL/6J mouse fed with fish-less chow for 2 weeks
Organs
Aorta (ApoE KO), Brain, Heart, Kidney, Liver, Lung, Macrophage, Muscle, Plasma, Plasma (ApoE KO), Small intestine, Spleen
Measurement
See Metabolonote database.


{{#ifeq:|ja|脂質記載法|Notation}}

The style follows the proposal for lipidomics nomenclature (Pauling JK et al. PLOS ONE 2017, PMID 29161304). Please visit the MS-DIAL page for more details.

Phosphoglycerolipid symbols
Name Notation
Phosphatidic acid PA
R2-lyso-PA LPA
Phosphatidyl-choline PC
R2-lyso-PC LPC
R1-ether-PC EtherPC
Phosphatidyl-ethanolamine PE
R2-lyso-PE LPE
R1-ether-PE EtherPE
Phosphatidyl-inositol PI
R2-lyso-PI LPI
Phosphatidyl-serine PS
R2-lyso-PS LPS
Phosphatidyl-glycerol PG
R2-lyso-PG LPG
Bis(monoacylglycero)phosphate BMP
1-Monoacylglycerol-phospho-2,3-diacylglycerol HBMP
Cardiolipin CL
Glycerolipid, Plant lipid, and other symbols
Name Notation
Triacylglycerol TAG
Diacylglycerol DAG
Monoacylglycerol MAG
Monogalactosyl-diacylglycerol MGDG
Digalactosyl-diacylglycerol DGDG
Sulfoquinovosyl-diacylglycerol SQDG
Diacylglyceryl-trimethylhomoserine DGTS
Glucuronosyl-diacylglycerol GlcADG
Fatty acid FA
Fatty acid ester of hydroxyl fatty acid FAHFA
Acylcarnitine ACar
Sphingomyelin SM
Ceramide symbols<ref>Masukawa Y et al. "Characterization of overall ceramide species in human stratum corneums" J Lipid Res 49
1466-1476, 2008</ref>
non-hydroxy FA
[N]
α-hydroxy FA
[A]
β-hydroxy FA
[B]
esterified ω-hydroxy FA
[EO]
dihydrosphingosine
[DS]
Cer-NDS Cer-ADS Cer-BDS Cer-EODS
sphingosine
[S]
Cer-NS Cer-AS Cer-BS Cer-EOS
phytosphingosine
[P]
Cer-NP Cer-AP Cer-BP Cer-EOP
6-hydroxy sphingosine
[H]
Cer-NH Cer-AH Cer-BH Cer-EOH

<references/>

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