Difference between revisions of "Lipoquality:Database"

From lipidbank_wiki
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     <td style="vartical-align:top">
 
     <td style="vartical-align:top">
 
<p>
 
<p>
<i>We will revise and follow the proposal for lipidomics nomenclature soon.</i>
+
<i>The style follows the proposal for lipidomics nomenclature.</i>
 
(Pauling JK et al. PLOS ONE 2017) PMID 29161304  
 
(Pauling JK et al. PLOS ONE 2017) PMID 29161304  
  
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|-
 
|-
 
| R2-lyso-PA
 
| R2-lyso-PA
| lysoPA
+
| LPA
 
|-
 
|-
 
| Phosphatidyl-choline
 
| Phosphatidyl-choline
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|-
 
|-
 
| R2-lyso-PC
 
| R2-lyso-PC
| lysoPC
+
| LPC
 
|-
 
|-
 
| R1-ether-PC
 
| R1-ether-PC
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|-
 
|-
 
| R2-lyso-PE
 
| R2-lyso-PE
| lysoPE
+
| LPE
 
|-
 
|-
 
| R1-ether-PE
 
| R1-ether-PE
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|-
 
|-
 
| R2-lyso-PI
 
| R2-lyso-PI
| lysoPI
+
| LPI
 
|-
 
|-
 
| Phosphatidyl-serine
 
| Phosphatidyl-serine
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|-
 
|-
 
| R2-lyso-PS
 
| R2-lyso-PS
| lysoPS
+
| LPS
 
|-
 
|-
 
| Phosphatidyl-glycerol
 
| Phosphatidyl-glycerol
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|-
 
|-
 
| R2-lyso-PG
 
| R2-lyso-PG
| lyzoPG
+
| LPG
 
|-
 
|-
 
| Bis(monoacylglycero)phosphate
 
| Bis(monoacylglycero)phosphate
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|-
 
|-
 
| 1-Monoacylglycerol-phospho-2,3-diacylglycerol
 
| 1-Monoacylglycerol-phospho-2,3-diacylglycerol
| hemiBMP
+
| HBMP
 
|-
 
|-
 
| Cardiolipin
 
| Cardiolipin
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|-
 
|-
 
| Triacylglycerol
 
| Triacylglycerol
| TG
+
| TAG
 
|-
 
|-
 
| Diacylglycerol
 
| Diacylglycerol
| DG
+
| DAG
 
|-
 
|-
 
| Monoacylglycerol
 
| Monoacylglycerol
| MG
+
| MAG
 
|-
 
|-
 
| Monogalactosyl-diacylglycerol
 
| Monogalactosyl-diacylglycerol
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|-
 
|-
 
| Acylcarnitine
 
| Acylcarnitine
| AC
+
| ACar
 
|-
 
|-
 
| Sphingomyelin
 
| Sphingomyelin
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|-
 
|-
 
! ''dihydrosphingosine''<br/>[DS]
 
! ''dihydrosphingosine''<br/>[DS]
| Cer[NDS]
+
| Cer-NDS
| Cer[ADS]
+
| Cer-ADS
| Cer[EODS]
+
| Cer-EODS
 
|-
 
|-
 
! ''sphingosine''<br/>[S]
 
! ''sphingosine''<br/>[S]
| Cer[NS]
+
| Cer-NS
| Cer[AS]
+
| Cer-AS
| Cer[EOS]
+
| Cer-EOS
 
|-
 
|-
 
! ''phytosphingosine''<br/>[P]
 
! ''phytosphingosine''<br/>[P]
| Cer[AP]
+
| Cer-AP
| Cer[NP]
+
| Cer-NP
| Cer[EOP]
+
| Cer-EOP
 
|-
 
|-
 
! ''6-hydroxy sphingosine''<br/>[H]
 
! ''6-hydroxy sphingosine''<br/>[H]
| Cer[NH]
+
| Cer-NH
| Cer[AH]
+
| Cer-AH
| Cer[EOH]
+
| Cer-EOH
 
|}
 
|}
  

Revision as of 00:47, 17 June 2018

Lipoquality

Resource

Please click here to access the lipoquality data.

Dataset

Mouse
C75BL/6J mouse fed with fish-less chow for 2 weeks
Organs
Aorta (ApoE KO), Brain, Heart, Kidney, Liver, Lung, Macrophage, Muscle, Plasma, Plasma (ApoE KO), Small intestine, Spleen
Measurement
See Metabolonote database.

Notation

The style follows the proposal for lipidomics nomenclature. (Pauling JK et al. PLOS ONE 2017) PMID 29161304

Phosphoglycerolipid symbols
Name Notation
Phosphatidic acid PA
R2-lyso-PA LPA
Phosphatidyl-choline PC
R2-lyso-PC LPC
R1-ether-PC EtherPC
Phosphatidyl-ethanolamine PE
R2-lyso-PE LPE
R1-ether-PE EtherPE
Phosphatidyl-inositol PI
R2-lyso-PI LPI
Phosphatidyl-serine PS
R2-lyso-PS LPS
Phosphatidyl-glycerol PG
R2-lyso-PG LPG
Bis(monoacylglycero)phosphate BMP
1-Monoacylglycerol-phospho-2,3-diacylglycerol HBMP
Cardiolipin CL
Glycerolipid, Plant lipid, and other symbols
Name Notation
Triacylglycerol TAG
Diacylglycerol DAG
Monoacylglycerol MAG
Monogalactosyl-diacylglycerol MGDG
Digalactosyl-diacylglycerol DGDG
Sulfoquinovosyl-diacylglycerol SQDG
Diacylglyceryl-trimethylhomoserine DGTS
Glucuronosyl-diacylglycerol GlcADG
Fatty acid FA
Fatty acid ester of hydroxyl fatty acid FAHFA
Acylcarnitine ACar
Sphingomyelin SM
Ceramide symbols[1]
non-hydroxy FA
[N]
α-hydroxy FA
[A]
esterified ω-hydroxy FA
[EO]
dihydrosphingosine
[DS]
Cer-NDS Cer-ADS Cer-EODS
sphingosine
[S]
Cer-NS Cer-AS Cer-EOS
phytosphingosine
[P]
Cer-AP Cer-NP Cer-EOP
6-hydroxy sphingosine
[H]
Cer-NH Cer-AH Cer-EOH

  1. Masukawa Y et al. "Characterization of overall ceramide species in human stratum corneums" J Lipid Res 49:1466-1476, 2008
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