Difference between revisions of "Lipoquality:Database"

From lipidbank_wiki
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     <td style="vartical-align:top">
 
     <td style="vartical-align:top">
 
<p>
 
<p>
<i>We will revise and follow the proposal for lipidomics nomenclature soon.</i>
+
<i>The style follows the proposal for lipidomics nomenclature.</i>
 
(Pauling JK et al. PLOS ONE 2017) PMID 29161304  
 
(Pauling JK et al. PLOS ONE 2017) PMID 29161304  
  
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|-
 
|-
 
| R2-lyso-PA
 
| R2-lyso-PA
| lysoPA
+
| LPA
 
|-
 
|-
 
| Phosphatidyl-choline
 
| Phosphatidyl-choline
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|-
 
|-
 
| R2-lyso-PC
 
| R2-lyso-PC
| lysoPC
+
| LPC
 
|-
 
|-
 
| R1-ether-PC
 
| R1-ether-PC
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|-
 
|-
 
| R2-lyso-PE
 
| R2-lyso-PE
| lysoPE
+
| LPE
 
|-
 
|-
 
| R1-ether-PE
 
| R1-ether-PE
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|-
 
|-
 
| R2-lyso-PI
 
| R2-lyso-PI
| lysoPI
+
| LPI
 
|-
 
|-
 
| Phosphatidyl-serine
 
| Phosphatidyl-serine
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|-
 
|-
 
| R2-lyso-PS
 
| R2-lyso-PS
| lysoPS
+
| LPS
 
|-
 
|-
 
| Phosphatidyl-glycerol
 
| Phosphatidyl-glycerol
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|-
 
|-
 
| R2-lyso-PG
 
| R2-lyso-PG
| lyzoPG
+
| LPG
 
|-
 
|-
 
| Bis(monoacylglycero)phosphate
 
| Bis(monoacylglycero)phosphate
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|-
 
|-
 
| 1-Monoacylglycerol-phospho-2,3-diacylglycerol
 
| 1-Monoacylglycerol-phospho-2,3-diacylglycerol
| hemiBMP
+
| HBMP
 
|-
 
|-
 
| Cardiolipin
 
| Cardiolipin
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|-
 
|-
 
| Triacylglycerol
 
| Triacylglycerol
| TG
+
| TAG
 
|-
 
|-
 
| Diacylglycerol
 
| Diacylglycerol
| DG
+
| DAG
 
|-
 
|-
 
| Monoacylglycerol
 
| Monoacylglycerol
| MG
+
| MAG
 
|-
 
|-
 
| Monogalactosyl-diacylglycerol
 
| Monogalactosyl-diacylglycerol
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|-
 
|-
 
| Acylcarnitine
 
| Acylcarnitine
| AC
+
| ACar
 
|-
 
|-
 
| Sphingomyelin
 
| Sphingomyelin
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|-
 
|-
 
! ''dihydrosphingosine''<br/>[DS]
 
! ''dihydrosphingosine''<br/>[DS]
| Cer[NDS]
+
| Cer-NDS
| Cer[ADS]
+
| Cer-ADS
| Cer[EODS]
+
| Cer-EODS
 
|-
 
|-
 
! ''sphingosine''<br/>[S]
 
! ''sphingosine''<br/>[S]
| Cer[NS]
+
| Cer-NS
| Cer[AS]
+
| Cer-AS
| Cer[EOS]
+
| Cer-EOS
 
|-
 
|-
 
! ''phytosphingosine''<br/>[P]
 
! ''phytosphingosine''<br/>[P]
| Cer[AP]
+
| Cer-AP
| Cer[NP]
+
| Cer-NP
| Cer[EOP]
+
| Cer-EOP
 
|-
 
|-
 
! ''6-hydroxy sphingosine''<br/>[H]
 
! ''6-hydroxy sphingosine''<br/>[H]
| Cer[NH]
+
| Cer-NH
| Cer[AH]
+
| Cer-AH
| Cer[EOH]
+
| Cer-EOH
 
|}
 
|}
  

Revision as of 01:47, 17 June 2018

Lipoquality

Resource

Please click here to access the lipoquality data.

Dataset

Mouse
C75BL/6J mouse fed with fish-less chow for 2 weeks
Organs
Aorta (ApoE KO), Brain, Heart, Kidney, Liver, Lung, Macrophage, Muscle, Plasma, Plasma (ApoE KO), Small intestine, Spleen
Measurement
See Metabolonote database.

{{#ifeq:|ja|脂質記載法|Notation}}

The style follows the proposal for lipidomics nomenclature. (Pauling JK et al. PLOS ONE 2017) PMID 29161304

Phosphoglycerolipid symbols
Name Notation
Phosphatidic acid PA
R2-lyso-PA LPA
Phosphatidyl-choline PC
R2-lyso-PC LPC
R1-ether-PC EtherPC
Phosphatidyl-ethanolamine PE
R2-lyso-PE LPE
R1-ether-PE EtherPE
Phosphatidyl-inositol PI
R2-lyso-PI LPI
Phosphatidyl-serine PS
R2-lyso-PS LPS
Phosphatidyl-glycerol PG
R2-lyso-PG LPG
Bis(monoacylglycero)phosphate BMP
1-Monoacylglycerol-phospho-2,3-diacylglycerol HBMP
Cardiolipin CL
Glycerolipid, Plant lipid, and other symbols
Name Notation
Triacylglycerol TAG
Diacylglycerol DAG
Monoacylglycerol MAG
Monogalactosyl-diacylglycerol MGDG
Digalactosyl-diacylglycerol DGDG
Sulfoquinovosyl-diacylglycerol SQDG
Diacylglyceryl-trimethylhomoserine DGTS
Glucuronosyl-diacylglycerol GlcADG
Fatty acid FA
Fatty acid ester of hydroxyl fatty acid FAHFA
Acylcarnitine ACar
Sphingomyelin SM
Ceramide symbols<ref>Masukawa Y et al. "Characterization of overall ceramide species in human stratum corneums" J Lipid Res 49
1466-1476, 2008</ref>
non-hydroxy FA
[N]
α-hydroxy FA
[A]
esterified ω-hydroxy FA
[EO]
dihydrosphingosine
[DS]
Cer-NDS Cer-ADS Cer-EODS
sphingosine
[S]
Cer-NS Cer-AS Cer-EOS
phytosphingosine
[P]
Cer-AP Cer-NP Cer-EOP
6-hydroxy sphingosine
[H]
Cer-NH Cer-AH Cer-EOH

<references/>

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